IL_6HCJ_161

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGCG*CGUCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_161 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3279

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6HCJ|1|A2|G|692
6HCJ|1|A2|A|693
6HCJ|1|A2|G|694
6HCJ|1|A2|C|695
6HCJ|1|A2|G|696
*
6HCJ|1|A2|C|730
6HCJ|1|A2|G|731
6HCJ|1|A2|U|732
6HCJ|1|A2|C|733
6HCJ|1|A2|C|734

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain I2

40S ribosomal protein S7

Chain X2

Ribosomal protein S15a