IL_6HCJ_162

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_162 not in the Motif Atlas

Homologous match to IL_4V88_423

Geometric discrepancy: 0.2586

The information below is about IL_4V88_423

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

6HCJ|1|A2|A|802
6HCJ|1|A2|C|803
*
6HCJ|1|A2|G|860
6HCJ|1|A2|A|861
6HCJ|1|A2|A|862
6HCJ|1|A2|U|863

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain I2

40S ribosomal protein S7

Chain M2

Ribosomal protein S11

Chain X2

Ribosomal protein S15a

Chain Y2

uS12