IL_6HCJ_164
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGC*GAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCJ_164 not in the Motif Atlas
- Geometric match to IL_4LFB_006
- Geometric discrepancy: 0.2267
- The information below is about IL_4LFB_006
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
6HCJ|1|A2|C|877
6HCJ|1|A2|G|878
6HCJ|1|A2|C|879
*
6HCJ|1|A2|G|907
6HCJ|1|A2|A|908
6HCJ|1|A2|G|909
Current chains
- Chain A2
- 18S ribosomal RNA
Nearby chains
- Chain R3
- eL19
Coloring options: