IL_6HCJ_168

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGCC*GAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_168 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3635

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6HCJ|1|A2|C|927
6HCJ|1|A2|G|928
6HCJ|1|A2|G|929
6HCJ|1|A2|C|930
6HCJ|1|A2|C|931
*
6HCJ|1|A2|G|1010
6HCJ|1|A2|A|1011
6HCJ|1|A2|A|1012
6HCJ|1|A2|U|1013
6HCJ|1|A2|G|1014

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain C2

40S ribosomal protein S3a

Chain O2

uS15

Chain c2

40S ribosomal protein S27