3D structure

PDB id
6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GCUAG*CUUGGACC
Length
13 nucleotides
Bulged bases
6HCJ|1|A2|G|970
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6HCJ_171 not in the Motif Atlas
Homologous match to IL_4V88_434
Geometric discrepancy: 0.1852
The information below is about IL_4V88_434
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_45067.5
Basepair signature
cWW-tSH-tSS-tHS-R-cWW-cWW-R
Number of instances in this motif group
16

Unit IDs

6HCJ|1|A2|G|952
6HCJ|1|A2|C|953
6HCJ|1|A2|U|954
6HCJ|1|A2|A|955
6HCJ|1|A2|G|956
*
6HCJ|1|A2|C|967
6HCJ|1|A2|U|968
6HCJ|1|A2|U|969
6HCJ|1|A2|G|970
6HCJ|1|A2|G|971
6HCJ|1|A2|A|972
6HCJ|1|A2|C|973
6HCJ|1|A2|C|974

Current chains

Chain A2
18S ribosomal RNA

Nearby chains

Chain 51
Large subunit ribosomal RNA; LSU rRNA
Chain C2
40S ribosomal protein S3a
Chain P2
uS11

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2207 s