IL_6HCJ_171

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

6HCJ|1|A2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_171 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1852

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6HCJ|1|A2|G|952
6HCJ|1|A2|C|953
6HCJ|1|A2|U|954
6HCJ|1|A2|A|955
6HCJ|1|A2|G|956
*
6HCJ|1|A2|C|967
6HCJ|1|A2|U|968
6HCJ|1|A2|U|969
6HCJ|1|A2|G|970
6HCJ|1|A2|G|971
6HCJ|1|A2|A|972
6HCJ|1|A2|C|973
6HCJ|1|A2|C|974

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain 51

Large subunit ribosomal RNA; LSU rRNA

Chain C2

40S ribosomal protein S3a

Chain P2

uS11