IL_6HCJ_173
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCJ_173 not in the Motif Atlas
- Geometric match to IL_6CZR_145
- Geometric discrepancy: 0.2065
- The information below is about IL_6CZR_145
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.6
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
6HCJ|1|A2|C|1047
6HCJ|1|A2|G|1048
6HCJ|1|A2|A|1049
6HCJ|1|A2|A|1050
6HCJ|1|A2|G|1051
*
6HCJ|1|A2|C|1067
6HCJ|1|A2|G|1068
6HCJ|1|A2|U|1069
6HCJ|1|A2|A|1070
6HCJ|1|A2|G|1071
Current chains
- Chain A2
- 18S ribosomal RNA
Nearby chains
- Chain 51
- Large subunit ribosomal RNA; LSU rRNA
- Chain A3
- Ribosomal protein L8
- Chain P2
- uS11
- Chain b2
- eS26
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