IL_6HCJ_186

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCGU*ACAGGU

Length

11 nucleotides

Bulged bases

6HCJ|1|A2|A|1489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_186 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3255

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6HCJ|1|A2|G|1335
6HCJ|1|A2|C|1336
6HCJ|1|A2|C|1337
6HCJ|1|A2|G|1338
6HCJ|1|A2|U|1339
*
6HCJ|1|A2|A|1487
6HCJ|1|A2|C|1488
6HCJ|1|A2|A|1489
6HCJ|1|A2|G|1490
6HCJ|1|A2|G|1491
6HCJ|1|A2|U|1492

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain D2

uS5

Chain E2

uS3

Chain R2

Ribosomal protein S16

Chain V2

uS10

Chain e2

uS14

Chain q3

Transfer RNA; tRNA

Chain v3

mRNA