IL_6HCJ_195

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6HCJ|1|A2|C|1701, 6HCJ|1|A2|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_195 not in the Motif Atlas

Homologous match to IL_4V88_463

Geometric discrepancy: 0.2544

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6HCJ|1|A2|C|1700
6HCJ|1|A2|C|1701
6HCJ|1|A2|G|1702
*
6HCJ|1|A2|C|1833
6HCJ|1|A2|A|1834
6HCJ|1|A2|A|1835
6HCJ|1|A2|G|1836

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain 33

Transfer RNA; tRNA

Chain b2

eS26

Chain v3

mRNA