IL_6HCJ_204

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCC*GCGC

Length

7 nucleotides

Bulged bases

6HCJ|1|A2|C|1783

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_204 not in the Motif Atlas

Homologous match to IL_4V88_475

Geometric discrepancy: 0.3419

The information below is about IL_4V88_475

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

6HCJ|1|A2|G|1749
6HCJ|1|A2|C|1750
6HCJ|1|A2|C|1751
*
6HCJ|1|A2|G|1782
6HCJ|1|A2|C|1783
6HCJ|1|A2|G|1784
6HCJ|1|A2|C|1785

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain H2

40S ribosomal protein S6