IL_6HCJ_216

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCC*GCGGC

Length

9 nucleotides

Bulged bases

6HCJ|1|51|C|696

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_216 not in the Motif Atlas

Homologous match to IL_8C3A_018

Geometric discrepancy: 0.3944

The information below is about IL_8C3A_018

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6HCJ|1|51|G|457
6HCJ|1|51|C|458
6HCJ|1|51|C|459
6HCJ|1|51|C|460
*
6HCJ|1|51|G|695
6HCJ|1|51|C|696
6HCJ|1|51|G|697
6HCJ|1|51|G|698
6HCJ|1|51|C|699

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain E3

60S ribosomal protein L6

Chain r3

eL28