IL_6HCJ_230

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCAGUU*AAUGC

Length

11 nucleotides

Bulged bases

6HCJ|1|51|G|1724

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_230 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3868

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6HCJ|1|51|G|1721
6HCJ|1|51|C|1722
6HCJ|1|51|A|1723
6HCJ|1|51|G|1724
6HCJ|1|51|U|1725
6HCJ|1|51|U|1726
*
6HCJ|1|51|A|1837
6HCJ|1|51|A|1838
6HCJ|1|51|U|1839
6HCJ|1|51|G|1840
6HCJ|1|51|C|1841

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain F3

uL30

Chain T3

eL21

Chain b3

eL29