IL_6HCJ_240

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGC*GUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_240 not in the Motif Atlas

Geometric match to IL_8C3A_444

Geometric discrepancy: 0.3934

The information below is about IL_8C3A_444

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

6HCJ|1|51|G|2555
6HCJ|1|51|G|2556
6HCJ|1|51|G|2557
6HCJ|1|51|C|2558
*
6HCJ|1|51|G|2569
6HCJ|1|51|U|2570
6HCJ|1|51|C|2571
6HCJ|1|51|C|2572

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain Z3

60S ribosomal protein L27