IL_6HCJ_258
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GACCG*CAGGUU
- Length
- 11 nucleotides
- Bulged bases
- 6HCJ|1|51|A|4548
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCJ_258 not in the Motif Atlas
- Geometric match to IL_7VYX_004
- Geometric discrepancy: 0.3216
- The information below is about IL_7VYX_004
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
6HCJ|1|51|G|4534
6HCJ|1|51|A|4535
6HCJ|1|51|C|4536
6HCJ|1|51|C|4537
6HCJ|1|51|G|4538
*
6HCJ|1|51|C|4547
6HCJ|1|51|A|4548
6HCJ|1|51|G|4549
6HCJ|1|51|G|4550
6HCJ|1|51|U|4551
6HCJ|1|51|U|4552
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain A3
- Ribosomal protein L8
- Chain I3
- 60S ribosomal protein L10
- Chain q3
- Transfer RNA; tRNA
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