IL_6HCJ_310

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCG*CGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_310 not in the Motif Atlas

Geometric match to IL_5E81_401

Geometric discrepancy: 0.3379

The information below is about IL_5E81_401

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42997.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

21

Unit IDs

6HCJ|1|51|G|1404
6HCJ|1|51|C|1405
6HCJ|1|51|G|1406
*
6HCJ|1|51|C|1411|||C
6HCJ|1|51|G|1412
6HCJ|1|51|C|1413

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain L3

eL13

Chain a3

uL15