IL_6HCJ_315

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6HCJ|1|51|U|1947

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_315 not in the Motif Atlas

Homologous match to IL_8P9A_281

Geometric discrepancy: 0.3045

The information below is about IL_8P9A_281

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6HCJ|1|51|G|1946
6HCJ|1|51|U|1947
6HCJ|1|51|G|1948
*
6HCJ|1|51|C|2035
6HCJ|1|51|C|2036

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 71

5S ribosomal RNA; 5S rRNA

Chain H3

uL6

Chain S3

eL20

Chain m3

eL40