IL_6HCJ_320

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCC*GUGAG

Length

8 nucleotides

Bulged bases

6HCJ|1|51|A|2725

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_320 not in the Motif Atlas

Geometric match to IL_6ZDU_001

Geometric discrepancy: 0.3654

The information below is about IL_6ZDU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99358.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6HCJ|1|51|C|2613
6HCJ|1|51|C|2614
6HCJ|1|51|C|2615
*
6HCJ|1|51|G|2722
6HCJ|1|51|U|2723
6HCJ|1|51|G|2724
6HCJ|1|51|A|2725
6HCJ|1|51|G|2726

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain R3

eL19

Chain g3

eL34