IL_6HCJ_342

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

6HCJ|1|A2|A|628, 6HCJ|1|A2|U|630, 6HCJ|1|A2|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_342 not in the Motif Atlas

Homologous match to IL_8CRE_423

Geometric discrepancy: 0.2624

The information below is about IL_8CRE_423

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6HCJ|1|A2|G|611
6HCJ|1|A2|U|612
6HCJ|1|A2|G|613
6HCJ|1|A2|C|614
6HCJ|1|A2|C|615
6HCJ|1|A2|A|616
6HCJ|1|A2|G|617
*
6HCJ|1|A2|C|624
6HCJ|1|A2|G|625
6HCJ|1|A2|G|626
6HCJ|1|A2|U|627
6HCJ|1|A2|A|628
6HCJ|1|A2|A|629
6HCJ|1|A2|U|630
6HCJ|1|A2|U|631
6HCJ|1|A2|C|632

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain E2

uS3

Chain Y2

uS12

Chain f2

40S ribosomal protein S30

Chain q3

Transfer RNA; tRNA

Chain v3

mRNA