IL_6HCJ_348

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_348 not in the Motif Atlas

Geometric match to IL_8P9A_401

Geometric discrepancy: 0.192

The information below is about IL_8P9A_401

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

6HCJ|1|A2|G|1108
6HCJ|1|A2|C|1109
6HCJ|1|A2|G|1110
*
6HCJ|1|A2|C|1123
6HCJ|1|A2|C|1124

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain B2

uS2

Chain C2

40S ribosomal protein S3a

Chain S2

eS17

Chain c2

40S ribosomal protein S27