IL_6HCJ_349

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_349 not in the Motif Atlas

Homologous match to IL_8CRE_442

Geometric discrepancy: 0.1633

The information below is about IL_8CRE_442

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

6HCJ|1|A2|G|1168
6HCJ|1|A2|G|1169
6HCJ|1|A2|A|1170
6HCJ|1|A2|G|1171
6HCJ|1|A2|U|1172
6HCJ|1|A2|A|1173
6HCJ|1|A2|U|1174
6HCJ|1|A2|G|1175
*
6HCJ|1|A2|U|1186
6HCJ|1|A2|G|1187
6HCJ|1|A2|A|1188
6HCJ|1|A2|A|1189
6HCJ|1|A2|A|1190
6HCJ|1|A2|C|1191

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain Y2

uS12

Chain n3

eL41