IL_6HCJ_352

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCCU*ACGGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_352 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3851

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6HCJ|1|A2|G|1737
6HCJ|1|A2|C|1738
6HCJ|1|A2|C|1739
6HCJ|1|A2|C|1740
6HCJ|1|A2|U|1741
*
6HCJ|1|A2|A|1793
6HCJ|1|A2|C|1794
6HCJ|1|A2|G|1795
6HCJ|1|A2|G|1796
6HCJ|1|A2|U|1797

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain H2

40S ribosomal protein S6

Chain J2

eS8