IL_6HCM_021

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

6HCM|1|52|G|666, 6HCM|1|52|A|667, 6HCM|1|52|C|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_021 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.2852

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

6HCM|1|52|G|487
6HCM|1|52|G|488
*
6HCM|1|52|C|665
6HCM|1|52|G|666
6HCM|1|52|A|667
6HCM|1|52|C|668
6HCM|1|52|C|669

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain Q3

eL18

Chain r3

eL28