IL_6HCM_021
3D structure
- PDB id
- 6HCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- GG*CGACC
- Length
- 7 nucleotides
- Bulged bases
- 6HCM|1|52|G|666, 6HCM|1|52|A|667, 6HCM|1|52|C|668
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCM_021 not in the Motif Atlas
- Geometric match to IL_1R3E_001
- Geometric discrepancy: 0.2852
- The information below is about IL_1R3E_001
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_84476.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
6HCM|1|52|G|487
6HCM|1|52|G|488
*
6HCM|1|52|C|665
6HCM|1|52|G|666
6HCM|1|52|A|667
6HCM|1|52|C|668
6HCM|1|52|C|669
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain C3
- uL4
- Chain Q3
- eL18
- Chain r3
- eL28
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