3D structure

PDB id
6HCM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit collided di-ribosome (stalled monosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
GG*CGACC
Length
7 nucleotides
Bulged bases
6HCM|1|52|G|666, 6HCM|1|52|A|667, 6HCM|1|52|C|668
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6HCM_021 not in the Motif Atlas
Geometric match to IL_1R3E_001
Geometric discrepancy: 0.2852
The information below is about IL_1R3E_001
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_84476.1
Basepair signature
cWW-cWW
Number of instances in this motif group
13

Unit IDs

6HCM|1|52|G|487
6HCM|1|52|G|488
*
6HCM|1|52|C|665
6HCM|1|52|G|666
6HCM|1|52|A|667
6HCM|1|52|C|668
6HCM|1|52|C|669

Current chains

Chain 52
28S ribosomal RNA

Nearby chains

Chain C3
uL4
Chain Q3
eL18
Chain r3
eL28

Coloring options:


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