IL_6HCM_023

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GCGG*CCC

Length

7 nucleotides

Bulged bases

6HCM|1|52|C|498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_023 not in the Motif Atlas

Geometric match to IL_5Z1I_001

Geometric discrepancy: 0.2654

The information below is about IL_5Z1I_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

6HCM|1|52|G|497
6HCM|1|52|C|498
6HCM|1|52|G|499
6HCM|1|52|G|500
*
6HCM|1|52|C|655
6HCM|1|52|C|656
6HCM|1|52|C|657

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain C3

uL4