IL_6HCM_059

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

ACUU*AACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_059 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.3149

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6HCM|1|52|A|1858
6HCM|1|52|C|1859
6HCM|1|52|U|1860
6HCM|1|52|U|1861
*
6HCM|1|52|A|1873
6HCM|1|52|A|1874
6HCM|1|52|C|1875
6HCM|1|52|U|1876

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain 72

5S ribosomal RNA; 5S rRNA

Chain F3

uL30

Chain b3

eL29