IL_6HCM_069
3D structure
- PDB id
- 6HCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- UGAGC*GCCG
- Length
- 9 nucleotides
- Bulged bases
- 6HCM|1|52|A|2300
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCM_069 not in the Motif Atlas
- Geometric match to IL_5J7L_283
- Geometric discrepancy: 0.3577
- The information below is about IL_5J7L_283
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6HCM|1|52|U|2298
6HCM|1|52|G|2299
6HCM|1|52|A|2300
6HCM|1|52|G|2301
6HCM|1|52|C|2302
*
6HCM|1|52|G|2333
6HCM|1|52|C|2334
6HCM|1|52|C|2335
6HCM|1|52|G|2336
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain 82
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C3
- uL4
- Chain Y3
- Ribosomal protein L26
- Chain e3
- eL32
- Chain r3
- eL28
Coloring options: