IL_6HCM_070

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CCUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6HCM|1|52|U|2305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_070 not in the Motif Atlas

Geometric match to IL_3V7E_002

Geometric discrepancy: 0.1945

The information below is about IL_3V7E_002

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6HCM|1|52|C|2302
6HCM|1|52|C|2303
6HCM|1|52|U|2304
6HCM|1|52|U|2305
6HCM|1|52|G|2306
6HCM|1|52|A|2307
6HCM|1|52|A|2308
6HCM|1|52|G|2309
*
6HCM|1|52|U|2329
6HCM|1|52|G|2330
6HCM|1|52|G|2331
6HCM|1|52|A|2332
6HCM|1|52|G|2333

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain 82

5.8S ribosomal RNA; 5.8S rRNA

Chain C3

uL4

Chain Y3

Ribosomal protein L26

Chain e3

eL32