3D structure

PDB id
6HCM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit collided di-ribosome (stalled monosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
CCUUGAAG*UGGAG
Length
13 nucleotides
Bulged bases
6HCM|1|52|U|2305
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6HCM_070 not in the Motif Atlas
Geometric match to IL_3V7E_002
Geometric discrepancy: 0.1945
The information below is about IL_3V7E_002
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.9
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
27

Unit IDs

6HCM|1|52|C|2302
6HCM|1|52|C|2303
6HCM|1|52|U|2304
6HCM|1|52|U|2305
6HCM|1|52|G|2306
6HCM|1|52|A|2307
6HCM|1|52|A|2308
6HCM|1|52|G|2309
*
6HCM|1|52|U|2329
6HCM|1|52|G|2330
6HCM|1|52|G|2331
6HCM|1|52|A|2332
6HCM|1|52|G|2333

Current chains

Chain 52
28S ribosomal RNA

Nearby chains

Chain 82
5.8S ribosomal RNA; 5.8S rRNA
Chain C3
uL4
Chain Y3
Ribosomal protein L26
Chain e3
eL32

Coloring options:


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