IL_6HCM_076

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CGG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_076 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.1923

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6HCM|1|52|C|2540
6HCM|1|52|G|2541
6HCM|1|52|G|2542
*
6HCM|1|52|C|2775
6HCM|1|52|G|2776

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain 82

5.8S ribosomal RNA; 5.8S rRNA

Chain X3

uL23

Chain g3

eL34

Chain k3

eL38