3D structure

PDB id
6HCM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit collided di-ribosome (stalled monosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
CGG*CG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6HCM_076 not in the Motif Atlas
Geometric match to IL_7A0S_054
Geometric discrepancy: 0.1923
The information below is about IL_7A0S_054
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_26793.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
16

Unit IDs

6HCM|1|52|C|2540
6HCM|1|52|G|2541
6HCM|1|52|G|2542
*
6HCM|1|52|C|2775
6HCM|1|52|G|2776

Current chains

Chain 52
28S ribosomal RNA

Nearby chains

Chain 82
5.8S ribosomal RNA; 5.8S rRNA
Chain X3
uL23
Chain g3
eL34
Chain k3
eL38

Coloring options:


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