IL_6HCM_078

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

6HCM|1|52|A|2725

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_078 not in the Motif Atlas

Homologous match to IL_5TBW_069

Geometric discrepancy: 0.2311

The information below is about IL_5TBW_069

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

6HCM|1|52|C|2613
6HCM|1|52|C|2614
*
6HCM|1|52|G|2724
6HCM|1|52|A|2725
6HCM|1|52|G|2726

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain R3

eL19

Chain g3

eL34