IL_6HCM_088

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GGCU*AACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_088 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.188

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6HCM|1|52|G|2888
6HCM|1|52|G|2889
6HCM|1|52|C|2890
6HCM|1|52|U|2891
*
6HCM|1|52|A|3610
6HCM|1|52|A|3611
6HCM|1|52|C|3612
6HCM|1|52|U|3613

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain J1

eS8

Chain R3

eL19

Chain W3

eL24