IL_6HCM_102

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GGUGUAGAAUAA*UAC

Length

15 nucleotides

Bulged bases

6HCM|1|52|U|3957, 6HCM|1|52|G|3958, 6HCM|1|52|U|3959, 6HCM|1|52|A|3962

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_102 not in the Motif Atlas

Geometric match to IL_5TBW_378

Geometric discrepancy: 0.376

The information below is about IL_5TBW_378

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6HCM|1|52|G|3955
6HCM|1|52|G|3956
6HCM|1|52|U|3957
6HCM|1|52|G|3958
6HCM|1|52|U|3959
6HCM|1|52|A|3960
6HCM|1|52|G|3961
6HCM|1|52|A|3962
6HCM|1|52|A|3963
6HCM|1|52|U|3964
6HCM|1|52|A|3965
6HCM|1|52|A|3966
*
6HCM|1|52|U|4055
6HCM|1|52|A|4056
6HCM|1|52|C|4057

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain u3

Ribosomal protein