IL_6HCM_109
3D structure
- PDB id
- 6HCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- GAUU*AAUAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCM_109 not in the Motif Atlas
- Geometric match to IL_4DB2_001
- Geometric discrepancy: 0.379
- The information below is about IL_4DB2_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_68909.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
6HCM|1|52|G|4297
6HCM|1|52|A|4298
6HCM|1|52|U|4299
6HCM|1|52|U|4300
*
6HCM|1|52|A|4310
6HCM|1|52|A|4311
6HCM|1|52|U|4312
6HCM|1|52|A|4313
6HCM|1|52|C|4314
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain D3
- 60S ribosomal protein L5
- Chain Q3
- eL18
- Chain T3
- eL21
- Chain b3
- eL29
- Chain o3
- eL42
Coloring options: