IL_6HCM_114

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6HCM|1|52|G|4522, 6HCM|1|52|A|4523

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_114 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.1802

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6HCM|1|52|C|4456
6HCM|1|52|U|4457
6HCM|1|52|C|4458
*
6HCM|1|52|G|4520
6HCM|1|52|U|4521
6HCM|1|52|G|4522
6HCM|1|52|A|4523
6HCM|1|52|G|4524

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain V3

Ribosomal protein L23

Chain j1

eRF1(AAQ)