IL_6HCM_147
3D structure
- PDB id
- 6HCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- GAUUAAG*CGC
- Length
- 10 nucleotides
- Bulged bases
- 6HCM|1|A1|U|44, 6HCM|1|A1|A|46
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCM_147 not in the Motif Atlas
- Geometric match to IL_4V88_387
- Geometric discrepancy: 0.2137
- The information below is about IL_4V88_387
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_77761.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
6HCM|1|A1|G|41
6HCM|1|A1|A|42
6HCM|1|A1|U|43
6HCM|1|A1|U|44
6HCM|1|A1|A|45
6HCM|1|A1|A|46
6HCM|1|A1|G|47
*
6HCM|1|A1|C|479
6HCM|1|A1|G|480
6HCM|1|A1|C|481
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain Y1
- uS12
- Chain k1
- ATP binding cassette subfamily E member 1
Coloring options: