IL_6HCM_152

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

UAUGGU*AACG

Length

10 nucleotides

Bulged bases

6HCM|1|A1|G|113, 6HCM|1|A1|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_152 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.36

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6HCM|1|A1|U|110
6HCM|1|A1|A|111
6HCM|1|A1|U|112
6HCM|1|A1|G|113
6HCM|1|A1|G|114
6HCM|1|A1|U|115
*
6HCM|1|A1|A|348
6HCM|1|A1|A|349
6HCM|1|A1|C|350
6HCM|1|A1|G|351

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain F1

eS4

Chain J1

eS8

Chain M1

Ribosomal protein S11