IL_6HCM_181

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_181 not in the Motif Atlas

Homologous match to IL_4V88_423

Geometric discrepancy: 0.2316

The information below is about IL_4V88_423

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

6HCM|1|A1|A|802
6HCM|1|A1|C|803
*
6HCM|1|A1|G|860
6HCM|1|A1|A|861
6HCM|1|A1|A|862
6HCM|1|A1|U|863

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain I1

40S ribosomal protein S7

Chain M1

Ribosomal protein S11

Chain X1

Ribosomal protein S15a

Chain Y1

uS12