IL_6HCM_185

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CGC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_185 not in the Motif Atlas

Homologous match to IL_4V88_427

Geometric discrepancy: 0.4416

The information below is about IL_4V88_427

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

6HCM|1|A1|C|877
6HCM|1|A1|G|878
6HCM|1|A1|C|879
*
6HCM|1|A1|G|907
6HCM|1|A1|A|908
6HCM|1|A1|G|909

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain R3

eL19