IL_6HCM_189
3D structure
- PDB id
- 6HCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- CGUAU*AGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCM_189 not in the Motif Atlas
- Geometric match to IL_4LFB_065
- Geometric discrepancy: 0.2176
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
6HCM|1|A1|C|941
6HCM|1|A1|G|942
6HCM|1|A1|U|943
6HCM|1|A1|A|944
6HCM|1|A1|U|945
*
6HCM|1|A1|A|981
6HCM|1|A1|G|982
6HCM|1|A1|A|983
6HCM|1|A1|C|984
6HCM|1|A1|G|985
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain A3
- Ribosomal protein L8
- Chain C1
- 40S ribosomal protein S3a
- Chain P1
- uS11
- Chain b1
- eS26
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