IL_6HCM_190

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

6HCM|1|A1|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_190 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.2045

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6HCM|1|A1|G|952
6HCM|1|A1|C|953
6HCM|1|A1|U|954
6HCM|1|A1|A|955
6HCM|1|A1|G|956
*
6HCM|1|A1|C|967
6HCM|1|A1|U|968
6HCM|1|A1|U|969
6HCM|1|A1|G|970
6HCM|1|A1|G|971
6HCM|1|A1|A|972
6HCM|1|A1|C|973
6HCM|1|A1|C|974

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain 52

Large subunit ribosomal RNA; LSU rRNA

Chain C1

40S ribosomal protein S3a

Chain P1

uS11