IL_6HCM_202
3D structure
- PDB id
- 6HCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 6HCM|1|A1|C|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCM_202 not in the Motif Atlas
- Geometric match to IL_4LFB_044
- Geometric discrepancy: 0.1862
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_76319.5
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
6HCM|1|A1|U|1329
6HCM|1|A1|G|1330
6HCM|1|A1|C|1331
6HCM|1|A1|A|1332
6HCM|1|A1|U|1333
*
6HCM|1|A1|A|1498
6HCM|1|A1|U|1499
6HCM|1|A1|G|1500
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain E1
- uS3
- Chain L1
- eS10
- Chain V1
- uS10
- Chain e1
- uS14
- Chain j1
- eRF1(AAQ)
- Chain w3
- mRNA
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