IL_6HCM_204

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6HCM|1|A1|A|1489

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_204 not in the Motif Atlas

Homologous match to IL_4V88_452

Geometric discrepancy: 0.2662

The information below is about IL_4V88_452

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6HCM|1|A1|C|1337
6HCM|1|A1|G|1338
*
6HCM|1|A1|C|1488
6HCM|1|A1|A|1489
6HCM|1|A1|G|1490

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain D1

uS5

Chain E1

uS3

Chain V1

uS10

Chain e1

uS14

Chain j1

eRF1(AAQ)

Chain w3

mRNA