IL_6HCM_208

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

6HCM|1|A1|C|1403, 6HCM|1|A1|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_208 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.2184

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

6HCM|1|A1|A|1402
6HCM|1|A1|C|1403
6HCM|1|A1|U|1404
6HCM|1|A1|A|1405
*
6HCM|1|A1|U|1441
6HCM|1|A1|U|1442
6HCM|1|A1|C|1443
6HCM|1|A1|U|1444

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain R1

Ribosomal protein S16

Chain V1

uS10

Chain h1

RACK1