IL_6HCM_214

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_214 not in the Motif Atlas

Geometric match to IL_5J7L_059

Geometric discrepancy: 0.2012

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6HCM|1|A1|G|1702
6HCM|1|A1|C|1703
6HCM|1|A1|C|1704
6HCM|1|A1|C|1705
*
6HCM|1|A1|G|1829
6HCM|1|A1|U|1830
6HCM|1|A1|A|1831
6HCM|1|A1|A|1832
6HCM|1|A1|C|1833

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain 23

Transfer RNA; tRNA

Chain 52

Large subunit ribosomal RNA; LSU rRNA

Chain j1

eRF1(AAQ)

Chain n3

eL41

Chain w3

mRNA