IL_6HCM_219

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

6HCM|1|A1|U|1721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_219 not in the Motif Atlas

Geometric match to IL_4V88_469

Geometric discrepancy: 0.2012

The information below is about IL_4V88_469

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6HCM|1|A1|U|1720
6HCM|1|A1|U|1721
6HCM|1|A1|G|1722
*
6HCM|1|A1|U|1812
6HCM|1|A1|A|1813

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain 52

Large subunit ribosomal RNA; LSU rRNA

Chain V3

Ribosomal protein L23

Chain Y1

uS12

Chain n3

eL41