IL_6HCM_265
3D structure
- PDB id
- 6HCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- GACCGU*ACAGGUU
- Length
- 13 nucleotides
- Bulged bases
- 6HCM|1|52|A|4548
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCM_265 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.355
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
6HCM|1|52|G|4534
6HCM|1|52|A|4535
6HCM|1|52|C|4536
6HCM|1|52|C|4537
6HCM|1|52|G|4538
6HCM|1|52|U|4539
*
6HCM|1|52|A|4546
6HCM|1|52|C|4547
6HCM|1|52|A|4548
6HCM|1|52|G|4549
6HCM|1|52|G|4550
6HCM|1|52|U|4551
6HCM|1|52|U|4552
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain 23
- Transfer RNA; tRNA
- Chain A3
- Ribosomal protein L8
- Chain j1
- eRF1(AAQ)
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