IL_6HCM_271

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GUCCC*GGUC

Length

9 nucleotides

Bulged bases

6HCM|1|52|C|4771

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_271 not in the Motif Atlas

Geometric match to IL_2O3Y_003

Geometric discrepancy: 0.2661

The information below is about IL_2O3Y_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

6HCM|1|52|G|4769
6HCM|1|52|U|4770
6HCM|1|52|C|4771
6HCM|1|52|C|4772
6HCM|1|52|C|4773
*
6HCM|1|52|G|4862
6HCM|1|52|G|4863
6HCM|1|52|U|4864
6HCM|1|52|C|4865

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain H3

uL6

Chain O3

uL13