IL_6HCM_274

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CGGG*CCUCG

Length

9 nucleotides

Bulged bases

6HCM|1|52|C|5054

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_274 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3321

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6HCM|1|52|C|4996
6HCM|1|52|G|4997
6HCM|1|52|G|4998
6HCM|1|52|G|4999
*
6HCM|1|52|C|5051
6HCM|1|52|C|5052
6HCM|1|52|U|5053
6HCM|1|52|C|5054
6HCM|1|52|G|5055

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain d3

eL31