IL_6HCM_283

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

UA*UAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_283 not in the Motif Atlas

Geometric match to IL_8C3A_146

Geometric discrepancy: 0.2373

The information below is about IL_8C3A_146

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_06586.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

6HCM|1|A1|U|220
6HCM|1|A1|A|221
*
6HCM|1|A1|U|300
6HCM|1|A1|A|301
6HCM|1|A1|A|302

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain J1

eS8

Chain M1

Ribosomal protein S11