IL_6HCM_288

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

AAU*AAUU

Length

7 nucleotides

Bulged bases

6HCM|1|A1|A|555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_288 not in the Motif Atlas

Geometric match to IL_8C3A_472

Geometric discrepancy: 0.2548

The information below is about IL_8C3A_472

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

6HCM|1|A1|A|528
6HCM|1|A1|A|529
6HCM|1|A1|U|530
*
6HCM|1|A1|A|554
6HCM|1|A1|A|555
6HCM|1|A1|U|556
6HCM|1|A1|U|557

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain K1

Ribosomal protein S9 (Predicted)

Chain f1

40S ribosomal protein S30