IL_6HCM_291

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GAGCGG*CCGUCC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_291 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3499

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6HCM|1|A1|G|692
6HCM|1|A1|A|693
6HCM|1|A1|G|694
6HCM|1|A1|C|695
6HCM|1|A1|G|696
6HCM|1|A1|G|697
*
6HCM|1|A1|C|729
6HCM|1|A1|C|730
6HCM|1|A1|G|731
6HCM|1|A1|U|732
6HCM|1|A1|C|733
6HCM|1|A1|C|734

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain I1

40S ribosomal protein S7

Chain X1

Ribosomal protein S15a