IL_6HCM_300

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_300 not in the Motif Atlas

Geometric match to IL_2OE5_001

Geometric discrepancy: 0.1698

The information below is about IL_2OE5_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

6HCM|1|A1|A|1537
6HCM|1|A1|C|1538
6HCM|1|A1|U|1539
*
6HCM|1|A1|A|1594
6HCM|1|A1|U|1595
6HCM|1|A1|U|1596

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain G1

Ribosomal protein S5

Chain R1

Ribosomal protein S16

Chain T1

uS13

Chain U1

eS19

Chain a1

eS25