IL_6HCM_304

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

UACC*GGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCM_304 not in the Motif Atlas

Geometric match to IL_5J7L_283

Geometric discrepancy: 0.245

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6HCM|1|A1|U|1714
6HCM|1|A1|A|1715
6HCM|1|A1|C|1716
6HCM|1|A1|C|1717
*
6HCM|1|A1|G|1816
6HCM|1|A1|G|1817
6HCM|1|A1|A|1818
6HCM|1|A1|A|1819

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain 52

Large subunit ribosomal RNA; LSU rRNA

Chain Y1

uS12

Chain n3

eL41