3D structure

PDB id
6HCM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit collided di-ribosome (stalled monosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
UACC*GGAA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6HCM_304 not in the Motif Atlas
Geometric match to IL_5J7L_283
Geometric discrepancy: 0.245
The information below is about IL_5J7L_283
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

6HCM|1|A1|U|1714
6HCM|1|A1|A|1715
6HCM|1|A1|C|1716
6HCM|1|A1|C|1717
*
6HCM|1|A1|G|1816
6HCM|1|A1|G|1817
6HCM|1|A1|A|1818
6HCM|1|A1|A|1819

Current chains

Chain A1
18S ribosomal RNA

Nearby chains

Chain 52
Large subunit ribosomal RNA; LSU rRNA
Chain Y1
uS12
Chain n3
eL41

Coloring options:


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